Common Fund Data Ecosystem (CFDE) Training Videos
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From Jeremy Walter November 04, 2021
This workshop was presented on November 3, 2021 by the Common Fund Data Ecosystem (CFDE) Training Team. Dr. Amanda Charbonneau was the presenter. If you have any… -
From Jeremy Walter August 31, 2021
This workshop will introduce attendees to AWS computer “instances” that let you rent compute time on large or specialized computers. We will also talk about… -
From Jeremy Walter August 30, 2021
This workshop will introduce attendees to the slurm system for using, queuing and scheduling analyses on high performance compute clusters. We will also cover cluster… -
From Jeremy Walter August 25, 2021
This workshop will introduce attendees to the snakemake workflow system, for executing large-scale automated analyses. Lesson materials and links to the rest of our… -
From Jeremy Walter August 24, 2021
This workshop will show attendees how to use the git version control system to track changes to your files on the remote system, as well as backup your project files to… -
From Jeremy Walter August 20, 2021
This workshop will show attendees how to automate their analyses using shell scripts, as well as run and manage software that takes minutes, hours, or days to execute.… -
From Jeremy Walter August 17, 2021
In this workshop, we will discuss folder structures for organizing your projects so that you can track inputs, outputs, and processing scripts over time, and keep… -
From Jeremy Walter August 13, 2021
This workshop will show attendees how to install and manage software using the conda installation system. We will give examples of installing Python and R software, and… -
From Jeremy Walter August 12, 2021
This workshop shows attendees how to use remote computers to run their analyses, work with the output files, and copy the results back to their laptop and desktop… -
From Jeremy Walter August 10, 2021
This workshop shows attendees how to connect to remote computers using ssh software, which is the most common way to do so. We will discuss usernames and passwords,… -
From Jeremy Walter August 04, 2021
This workshop will introduce attendees to the concepts and skills needed to create, modify, and search text files on remote computers. We will discuss files and content… -
From Jeremy Walter August 03, 2021
This workshop introduces the UNIX command line, which is the main way to interact with remote computers. We will cover computing concepts, file systems and directory… -
From Jeremy Walter July 29, 2021
This free two-hour workshop provides an overview of basics of R programming language along with RStudio which is a user-friendly environment for working with R. You will… -
From Saranya Canchi July 28, 2021
Tagging and download of DESeq2 app generated outputs -
From Saranya Canchi July 28, 2021
Selecting all the settings for the DESeq2 app