Common Fund Data Ecosystem (CFDE) Training Videos
Common Fund Data Ecosystem (CFDE) Training Videos
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This workshop was presented on November 3, 2021 by the Common Fund Data Ecosystem (CFDE) Training Team. Dr. Amanda Charbonneau was the presenter. If you have any…
RNA-Seq Concepts, Design & Workflows -…
From Jeremy Walter
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This workshop will introduce attendees to AWS computer “instances” that let you rent compute time on large or specialized computers. We will also talk about…
Workshop 11: Making Use of On-Demand…
From Jeremy Walter
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This workshop will introduce attendees to the slurm system for using, queuing and scheduling analyses on high performance compute clusters. We will also cover cluster…
Workshop 10: Executing Large Analyses on HPC…
From Jeremy Walter
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This workshop will introduce attendees to the snakemake workflow system, for executing large-scale automated analyses. Lesson materials and links to the rest of our…
Workshop 9: Automating Your Analyses with the…
From Jeremy Walter
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This workshop will show attendees how to use the git version control system to track changes to your files on the remote system, as well as backup your project files to…
Workshop 8: Keeping Track of Your Files with…
From Jeremy Walter
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This workshop will show attendees how to automate their analyses using shell scripts, as well as run and manage software that takes minutes, hours, or days to execute.…
Workshop 7: Automating Your Analyses and…
From Jeremy Walter
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In this workshop, we will discuss folder structures for organizing your projects so that you can track inputs, outputs, and processing scripts over time, and keep…
Structuring Your Projects for Current and Future…
From Jeremy Walter
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This workshop will show attendees how to install and manage software using the conda installation system. We will give examples of installing Python and R software, and…
Installing Software on Remote Computers with Conda
From Jeremy Walter
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This workshop shows attendees how to use remote computers to run their analyses, work with the output files, and copy the results back to their laptop and desktop…
Running Programs on Remote Computers and…
From Jeremy Walter
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This workshop shows attendees how to connect to remote computers using ssh software, which is the most common way to do so. We will discuss usernames and passwords,…
Connecting to Remote Computers with SSH
From Jeremy Walter
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This workshop will introduce attendees to the concepts and skills needed to create, modify, and search text files on remote computers. We will discuss files and content…
Creating and Modifying Text Files on Remote…
From Jeremy Walter
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This workshop introduces the UNIX command line, which is the main way to interact with remote computers. We will cover computing concepts, file systems and directory…
Intro to the UNIX Command Line
From Jeremy Walter
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This free two-hour workshop provides an overview of basics of R programming language along with RStudio which is a user-friendly environment for working with R. You will…
Intro to R Programming
From Jeremy Walter
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Tagging and download of DESeq2 app generated outputs
Tag_Download_App_Output
From Saranya Canchi
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Selecting all the settings for the DESeq2 app
AppSetting_DESeq2_App
From Saranya Canchi
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