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farm HPC hands-on: Friday 2pm, Jan 27th, 2023

https://github.com/datalab-affiliates/events/issues/3

From  Charles Brown 0 likes 1 plays 0  

ECS-235A, November 7, 2022

ECS-235A, Lecture 21, November 7, 2022

From  Matt Bishop 0 likes 41 plays 0  

Introduction to the Unix Command Line – 2022-10-06

Learn and practice how to talk directly to your computer via the command line. The Unix shell is a powerful tool for using scientific software, working with large datasets, and controlling remote…

From  DataLab 0 likes 9 plays

ECS 235A, September 26, 2022

ECS 235A, Lecture 3, September 26, 2022

From  Matt Bishop 0 likes 33 plays 0  

CFDE May Hackathon - Intro to R for RNA-Seq

RNA-Sequencing (RNA-Seq) is a popular method for determining the presence and quantity of RNA in biological samples. In this 3 hour workshop, we use R to explore publicly-available RNA-Seq data from…

From  Jeremy Walter 0 likes 45 plays 0  

ECS 235B Winter Quarter 2022, Lecture 4

Lecture 4, on January 10, 2022 of ECS 235B, Foundations of Computer and Information Security

From  Matt Bishop 0 likes 32 plays 0  

ECS 235B Winter Quarter 2022, Lecture 2

Lecture 2, on January 5, 2022 of ECS 235B, Foundations of Computer and Information Security

From  Matt Bishop 0 likes 37 plays 0  

Introduction to the Unix Command Line Workshop – 2021-11-04

Learn and practice how to talk directly to your computer via the command line. The Unix shell is a powerful tool for using scientific software, working with large datasets, and controlling remote…

From  DataLab 0 likes 47 plays

ECS 235A Fall Quarter 2021, Lecture 3, September 27, 2021

This is the video of the third lecture. It's crude as I made it from my laptop, as the room has no video recording. Again.

From  Matt Bishop 0 likes 12 plays 0  

Workshop 10: Executing Large Analyses on HPC Clusters with Slurm

This workshop will introduce attendees to the slurm system for using, queuing and scheduling analyses on high performance compute clusters. We will also cover cluster computing concepts and talk…

From  Jeremy Walter 0 likes 12 plays 0  

Workshop 9: Automating Your Analyses with the Snakemake Workflow System

This workshop will introduce attendees to the snakemake workflow system, for executing large-scale automated analyses. Lesson materials and links to the rest of our Introduction to Computing series…

From  Jeremy Walter 0 likes 21 plays 0  

Workshop 8: Keeping Track of Your Files with Version Control

This workshop will show attendees how to use the git version control system to track changes to your files on the remote system, as well as backup your project files to github and transfer them to…

From  Jeremy Walter 0 likes 8 plays 0  

Workshop 7: Automating Your Analyses and Executing Long-Running Analyses on Remote Computers

This workshop will show attendees how to automate their analyses using shell scripts, as well as run and manage software that takes minutes, hours, or days to execute. We’ll also show you how…

From  Jeremy Walter 0 likes 10 plays 0  

Installing Software on Remote Computers with Conda

This workshop will show attendees how to install and manage software using the conda installation system. We will give examples of installing Python and R software, and managing conda environments on…

From  Jeremy Walter 0 likes 13 plays 0  

Running Programs on Remote Computers and Retrieving Results

This workshop shows attendees how to use remote computers to run their analyses, work with the output files, and copy the results back to their laptop and desktop computers. We will discuss input and…

From  Jeremy Walter 0 likes 12 plays 0  

Connecting to Remote Computers with SSH

This workshop shows attendees how to connect to remote computers using ssh software, which is the most common way to do so. We will discuss usernames and passwords, introduce ssh software clients,…

From  Jeremy Walter 0 likes 42 plays 0